diff --git a/builtin/clone.c b/builtin/clone.c
index 545105a86f..ee24162ca4 100644
--- a/builtin/clone.c
+++ b/builtin/clone.c
@@ -841,20 +841,21 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 		git_dir = mkpathdup("%s/.git", dir);
 	}
 
+	atexit(remove_junk);
+	sigchain_push_common(remove_junk_on_signal);
+
 	if (!option_bare) {
-		junk_work_tree = work_tree;
 		if (safe_create_leading_directories_const(work_tree) < 0)
 			die_errno(_("could not create leading directories of '%s'"),
 				  work_tree);
 		if (!dest_exists && mkdir(work_tree, 0777))
 			die_errno(_("could not create work tree dir '%s'."),
 				  work_tree);
+		junk_work_tree = work_tree;
 		set_git_work_tree(work_tree);
 	}
-	junk_git_dir = git_dir;
-	atexit(remove_junk);
-	sigchain_push_common(remove_junk_on_signal);
 
+	junk_git_dir = git_dir;
 	if (safe_create_leading_directories_const(git_dir) < 0)
 		die(_("could not create leading directories of '%s'"), git_dir);