Various codepaths in the core-ish part learn to work on an
arbitrary in-core index structure, not necessarily the default
instance "the_index".
* nd/the-index: (23 commits)
revision.c: reduce implicit dependency the_repository
revision.c: remove implicit dependency on the_index
ws.c: remove implicit dependency on the_index
tree-diff.c: remove implicit dependency on the_index
submodule.c: remove implicit dependency on the_index
line-range.c: remove implicit dependency on the_index
userdiff.c: remove implicit dependency on the_index
rerere.c: remove implicit dependency on the_index
sha1-file.c: remove implicit dependency on the_index
patch-ids.c: remove implicit dependency on the_index
merge.c: remove implicit dependency on the_index
merge-blobs.c: remove implicit dependency on the_index
ll-merge.c: remove implicit dependency on the_index
diff-lib.c: remove implicit dependency on the_index
read-cache.c: remove implicit dependency on the_index
diff.c: remove implicit dependency on the_index
grep.c: remove implicit dependency on the_index
diff.c: remove the_index dependency in textconv() functions
blame.c: rename "repo" argument to "r"
combine-diff.c: remove implicit dependency on the_index
...
Using the more restrictive oideq() should, in the long run,
give the compiler more opportunities to optimize these
callsites. For now, this conversion should be a complete
noop with respect to the generated code.
The result is also perhaps a little more readable, as it
avoids the "zero is equal" idiom. Since it's so prevalent in
C, I think seasoned programmers tend not to even notice it
anymore, but it can sometimes make for awkward double
negations (e.g., we can drop a few !!oidcmp() instances
here).
This patch was generated almost entirely by the included
coccinelle patch. This mechanical conversion should be
completely safe, because we check explicitly for cases where
oidcmp() is compared to 0, which is what oideq() is doing
under the hood. Note that we don't have to catch "!oidcmp()"
separately; coccinelle's standard isomorphisms make sure the
two are treated equivalently.
I say "almost" because I did hand-edit the coccinelle output
to fix up a few style violations (it mostly keeps the
original formatting, but sometimes unwraps long lines).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Many more strings are prepared for l10n.
* nd/i18n: (23 commits)
transport-helper.c: mark more strings for translation
transport.c: mark more strings for translation
sha1-file.c: mark more strings for translation
sequencer.c: mark more strings for translation
replace-object.c: mark more strings for translation
refspec.c: mark more strings for translation
refs.c: mark more strings for translation
pkt-line.c: mark more strings for translation
object.c: mark more strings for translation
exec-cmd.c: mark more strings for translation
environment.c: mark more strings for translation
dir.c: mark more strings for translation
convert.c: mark more strings for translation
connect.c: mark more strings for translation
config.c: mark more strings for translation
commit-graph.c: mark more strings for translation
builtin/replace.c: mark more strings for translation
builtin/pack-objects.c: mark more strings for translation
builtin/grep.c: mark strings for translation
builtin/config.c: mark more strings for translation
...
Many messages will be marked for translation in the following
commits. This commit updates some of them to be more consistent and
reduce diff noise in those commits. Changes are
- keep the first letter of die(), error() and warning() in lowercase
- no full stop in die(), error() or warning() if it's single sentence
messages
- indentation
- some messages are turned to BUG(), or prefixed with "BUG:" and will
not be marked for i18n
- some messages are improved to give more information
- some messages are broken down by sentence to be i18n friendly
(on the same token, combine multiple warning() into one big string)
- the trailing \n is converted to printf_ln if possible, or deleted
if not redundant
- errno_errno() is used instead of explicit strerror()
Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Add a repository argument to allow callers of lookup_commit to be more
specific about which repository to handle. This is a small mechanical
change; it doesn't change the implementation to handle repositories
other than the_repository yet.
As with the previous commits, use a macro to catch callers passing a
repository other than the_repository at compile time.
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Add a repository argument to allow the callers of lookup_blob
to be more specific about which repository to act on. This is a small
mechanical change; it doesn't change the implementation to handle
repositories other than the_repository yet.
As with the previous commits, use a macro to catch callers passing a
repository other than the_repository at compile time.
Signed-off-by: Jonathan Nieder <jrnieder@gmail.com>
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Add a repository argument to allow the callers of parse_object_buffer
to be more specific about which repository to act on. This is a small
mechanical change; it doesn't change the implementation to handle
repositories other than the_repository yet.
As with the previous commits, use a macro to catch callers passing a
repository other than the_repository at compile time.
Signed-off-by: Jonathan Nieder <jrnieder@gmail.com>
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Add a repository argument to allow callers of lookup_object to be more
specific about which repository to handle. This is a small mechanical
change; it doesn't change the implementation to handle repositories
other than the_repository yet.
As with the previous commits, use a macro to catch callers passing a
repository other than the_repository at compile time.
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Add a repository argument to allow the callers of parse_object
to be more specific about which repository to act on. This is a small
mechanical change; it doesn't change the implementation to handle
repositories other than the_repository yet.
As with the previous commits, use a macro to catch callers passing a
repository other than the_repository at compile time.
Signed-off-by: Jonathan Nieder <jrnieder@gmail.com>
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The in-core "commit" object had an all-purpose "void *util" field,
which was tricky to use especially in library-ish part of the
code. All of the existing uses of the field has been migrated to a
more dedicated "commit-slab" mechanism and the field is eliminated.
* nd/commit-util-to-slab:
commit.h: delete 'util' field in struct commit
merge: use commit-slab in merge remote desc instead of commit->util
log: use commit-slab in prepare_bases() instead of commit->util
show-branch: note about its object flags usage
show-branch: use commit-slab for commit-name instead of commit->util
name-rev: use commit-slab for rev-name instead of commit->util
bisect.c: use commit-slab for commit weight instead of commit->util
revision.c: use commit-slab for show_source
sequencer.c: use commit-slab to associate todo items to commits
sequencer.c: use commit-slab to mark seen commits
shallow.c: use commit-slab for commit depth instead of commit->util
describe: use commit-slab for commit names instead of commit->util
blame: use commit-slab for blame suspects instead of commit->util
commit-slab: support shared commit-slab
commit-slab.h: code split
"git fetch $there $refspec" that talks over protocol v2 can take
advantage of server-side ref filtering; the code has been extended
so that this mechanism triggers also when fetching with configured
refspec.
* bw/ref-prefix-for-configured-refspec: (38 commits)
fetch: generate ref-prefixes when using a configured refspec
refspec: consolidate ref-prefix generation logic
submodule: convert push_unpushed_submodules to take a struct refspec
remote: convert check_push_refs to take a struct refspec
remote: convert match_push_refs to take a struct refspec
http-push: store refspecs in a struct refspec
transport: remove transport_verify_remote_names
send-pack: store refspecs in a struct refspec
transport: convert transport_push to take a struct refspec
push: convert to use struct refspec
push: check for errors earlier
remote: convert match_explicit_refs to take a struct refspec
remote: convert get_ref_match to take a struct refspec
remote: convert query_refspecs to take a struct refspec
remote: convert apply_refspecs to take a struct refspec
remote: convert get_stale_heads to take a struct refspec
fetch: convert prune_refs to take a struct refspec
fetch: convert get_ref_map to take a struct refspec
fetch: convert do_fetch to take a struct refspec
refspec: remove the deprecated functions
...
Developer support update, by using BUG() macro instead of die() to
mark codepaths that should not happen more clearly.
* js/use-bug-macro:
BUG_exit_code: fix sparse "symbol not declared" warning
Convert remaining die*(BUG) messages
Replace all die("BUG: ...") calls by BUG() ones
run-command: use BUG() to report bugs, not die()
test-tool: help verifying BUG() code paths
The codepath around object-info API has been taught to take the
repository object (which in turn tells the API which object store
the objects are to be located).
* sb/oid-object-info:
cache.h: allow oid_object_info to handle arbitrary repositories
packfile: add repository argument to cache_or_unpack_entry
packfile: add repository argument to unpack_entry
packfile: add repository argument to read_object
packfile: add repository argument to packed_object_info
packfile: add repository argument to packed_to_object_type
packfile: add repository argument to retry_bad_packed_offset
cache.h: add repository argument to oid_object_info
cache.h: add repository argument to oid_object_info_extended
The code has been taught to use the duplicated information stored
in the commit-graph file to learn the tree object name for a commit
to avoid opening and parsing the commit object when it makes sense
to do so.
* ds/lazy-load-trees:
coccinelle: avoid wrong transformation suggestions from commit.cocci
commit-graph: lazy-load trees for commits
treewide: replace maybe_tree with accessor methods
commit: create get_commit_tree() method
treewide: rename tree to maybe_tree
Instead of relying on commit->util to store the source string, let the
user provide a commit-slab to store the source strings in.
It's done so that commit->util can be removed. See more explanation in
the commit that removes commit->util.
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Convert 'apply_refspecs()' to take a 'struct refspec' as a parameter instead
of a list of 'struct refspec_item'.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Convert fast-export to use 'struct refspec' instead of using a list of
refspec_item's.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
In preparation for introducing an abstraction around a collection of
refspecs (much like how a 'struct pathspec' is a collection of 'struct
pathspec_item's) rename the existing 'struct refspec' to 'struct
refspec_item'.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
In preparation for performing a refactor on refspec related code, move
the refspec parsing logic into its own file.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
This should make these functions easier to find and cache.h less
overwhelming to read.
In particular, this moves:
- read_object_file
- oid_object_info
- write_object_file
As a result, most of the codebase needs to #include object-store.h.
In this patch the #include is only added to files that would fail to
compile otherwise. It would be better to #include wherever
identifiers from the header are used. That can happen later
when we have better tooling for it.
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Clang 6 reports the following warning, which is turned into an error in a
DEVELOPER build:
builtin/fast-export.c:162:28: error: performing pointer arithmetic on a null pointer has undefined behavior [-Werror,-Wnull-pointer-arithmetic]
return ((uint32_t *)NULL) + mark;
~~~~~~~~~~~~~~~~~~ ^
1 error generated.
The compiler is correct, and the error message speaks for itself. There
is no need for any undefined operation -- just cast mark to void * or
uint32_t after an intermediate cast to uintptr_t. That encodes the
integer value into a pointer and later decodes it as intended.
While at it remove an outdated comment -- intptr_t has been used since
ffe659f94d (parse-options: make some arguments optional, add callbacks),
committed in October 2007.
Signed-off-by: Rene Scharfe <l.s.r@web.de>
Acked-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
"git fast-export" had a regression in v2.15.0 era where it skipped
some merge commits in certain cases, which has been corrected.
* ma/fast-export-skip-merge-fix:
fast-export: fix regression skipping some merge-commits
In d8193743e0 (usage.c: add BUG() function, 2017-05-12), a new macro
was introduced to use for reporting bugs instead of die(). It was then
subsequently used to convert one single caller in 588a538ae5
(setup_git_env: convert die("BUG") to BUG(), 2017-05-12).
The cover letter of the patch series containing this patch
(cf 20170513032414.mfrwabt4hovujde2@sigill.intra.peff.net) is not
terribly clear why only one call site was converted, or what the plan
is for other, similar calls to die() to report bugs.
Let's just convert all remaining ones in one fell swoop.
This trick was performed by this invocation:
sed -i 's/die("BUG: /BUG("/g' $(git grep -l 'die("BUG' \*.c)
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Add a repository argument to allow the callers of oid_object_info
to be more specific about which repository to handle. This is a small
mechanical change; it doesn't change the implementation to handle
repositories other than the_repository yet.
As with the previous commits, use a macro to catch callers passing a
repository other than the_repository at compile time.
Signed-off-by: Stefan Beller <sbeller@google.com>
Reviewed-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
7199203937 (object_array: add and use `object_array_pop()`, 2017-09-23)
noted that the pattern `object = array.objects[--array.nr].item` could
be abstracted as `object = object_array_pop(&array)`.
Unfortunately, one of the conversions was horribly wrong. Between
grabbing the last object (i.e., peeking at it) and decreasing the object
count, the original code would sometimes return early. The updated code
on the other hand, will always pop the last element, then maybe do the
early return without doing anything with the object.
The end result is that merge commits where all the parents have still
not been exported will simply be dropped, meaning that they will be
completely missing from the exported data.
Re-add a commit when it is not yet time to handle it. An alternative
that was considered was to peek-then-pop. That carries some risk with it
since the peeking and popping need to act on the same object, in a
concerted fashion.
Add a test that would have caught this.
Reported-by: Isaac Chou <Isaac.Chou@microfocus.com>
Analyzed-by: Isaac Chou <Isaac.Chou@microfocus.com>
Helped-by: Johannes Schindelin <Johannes.Schindelin@gmx.de>
Signed-off-by: Martin Ågren <martin.agren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
In anticipation of making trees load lazily, create a Coccinelle
script (contrib/coccinelle/commit.cocci) to ensure that all
references to the 'maybe_tree' member of struct commit are either
mutations or accesses through get_commit_tree() or
get_commit_tree_oid().
Apply the Coccinelle script to create the rest of the patch.
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Using the commit-graph file to walk commit history removes the large
cost of parsing commits during the walk. This exposes a performance
issue: lookup_tree() takes a large portion of the computation time,
even when Git never uses those trees.
In anticipation of lazy-loading these trees, rename the 'tree' member
of struct commit to 'maybe_tree'. This serves two purposes: it hints
at the future role of possibly being NULL even if the commit has a
valid tree, and it allows for unambiguous transformation from simple
member access (i.e. commit->maybe_tree) to method access.
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Convert read_sha1_file to take a pointer to struct object_id and rename
it read_object_file. Do the same for read_sha1_file_extended.
Convert one use in grep.c to use the new function without any other code
change, since the pointer being passed is a void pointer that is already
initialized with a pointer to struct object_id. Update the declaration
and definitions of the modified functions, and apply the following
semantic patch to convert the remaining callers:
@@
expression E1, E2, E3;
@@
- read_sha1_file(E1.hash, E2, E3)
+ read_object_file(&E1, E2, E3)
@@
expression E1, E2, E3;
@@
- read_sha1_file(E1->hash, E2, E3)
+ read_object_file(E1, E2, E3)
@@
expression E1, E2, E3, E4;
@@
- read_sha1_file_extended(E1.hash, E2, E3, E4)
+ read_object_file_extended(&E1, E2, E3, E4)
@@
expression E1, E2, E3, E4;
@@
- read_sha1_file_extended(E1->hash, E2, E3, E4)
+ read_object_file_extended(E1, E2, E3, E4)
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Convert sha1_object_info and sha1_object_info_extended to take pointers
to struct object_id and rename them to use "oid" instead of "sha1" in
their names. Update the declaration and definition and apply the
following semantic patch, plus the standard object_id transforms:
@@
expression E1, E2;
@@
- sha1_object_info(E1.hash, E2)
+ oid_object_info(&E1, E2)
@@
expression E1, E2;
@@
- sha1_object_info(E1->hash, E2)
+ oid_object_info(E1, E2)
@@
expression E1, E2, E3;
@@
- sha1_object_info_extended(E1.hash, E2, E3)
+ oid_object_info_extended(&E1, E2, E3)
@@
expression E1, E2, E3;
@@
- sha1_object_info_extended(E1->hash, E2, E3)
+ oid_object_info_extended(E1, E2, E3)
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Convert this function to take a pointer to struct object_id and rename
it check_object_signature. Introduce temporaries to convert the return
values of lookup_replace_object and lookup_replace_object_extended into
struct object_id.
The temporaries are needed because in order to convert
lookup_replace_object, open_istream needs to be converted, and
open_istream needs check_sha1_signature to be converted, causing a loop
of dependencies. The temporaries will be removed in a future patch.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Rename C++ keyword in order to bring the codebase closer to being able
to be compiled with a C++ compiler.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Improve the names of the identifiers in decorate.h, document them, and
add an example of how to use these functions.
The example is compiled and run as part of the test suite.
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
A single-word "unsigned flags" in the diff options is being split
into a structure with many bitfields.
* bw/diff-opt-impl-to-bitfields:
diff: make struct diff_flags members lowercase
diff: remove DIFF_OPT_CLR macro
diff: remove DIFF_OPT_SET macro
diff: remove DIFF_OPT_TST macro
diff: remove touched flags
diff: add flag to indicate textconv was set via cmdline
diff: convert flags to be stored in bitfields
add, reset: use DIFF_OPT_SET macro to set a diff flag
Remove the `DIFF_OPT_SET` macro and instead set the flags directly.
This conversion is done using the following semantic patch:
@@
expression E;
identifier fld;
@@
- DIFF_OPT_SET(&E, fld)
+ E.flags.fld = 1
@@
type T;
T *ptr;
identifier fld;
@@
- DIFF_OPT_SET(ptr, fld)
+ ptr->flags.fld = 1
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
All of the callers of these functions just pass the hash member of a
struct object_id, so convert them to use a pointer to struct object_id
directly. Insert a check for NULL in expand_ref on a temporary basis;
this check can be removed when resolve_ref_unsafe is converted as well.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Memory leaks in various codepaths have been plugged.
* ma/leakplugs:
pack-bitmap[-write]: use `object_array_clear()`, don't leak
object_array: add and use `object_array_pop()`
object_array: use `object_array_clear()`, not `free()`
leak_pending: use `object_array_clear()`, not `free()`
commit: fix memory leak in `reduce_heads()`
builtin/commit: fix memory leak in `prepare_index()`
"git fast-export" with -M/-C option issued "copy" instruction on a
path that is simultaneously modified, which was incorrect.
* jt/fast-export-copy-modify-fix:
fast-export: do not copy from modified file
In a couple of places, we pop objects off an object array `foo` by
decreasing `foo.nr`. We access `foo.nr` in many places, but most if not
all other times we do so read-only, e.g., as we iterate over the array.
But when we change `foo.nr` behind the array's back, it feels a bit
nasty and looks like it might leak memory.
Leaks happen if the popped element has an allocated `name` or `path`.
At the moment, that is not the case. Still, 1) the object array might
gain more fields that want to be freed, 2) a code path where we pop
might start using names or paths, 3) one of these code paths might be
copied to somewhere where we do, and 4) using a dedicated function for
popping is conceptually cleaner.
Introduce and use `object_array_pop()` instead. Release memory in the
new function. Document that popping an object leaves the associated
elements in limbo.
The converted places were identified by grepping for "\.nr\>" and
looking for "--".
Make the new function return NULL on an empty array. This is consistent
with `pop_commit()` and allows the following:
while ((o = object_array_pop(&foo)) != NULL) {
// do something
}
But as noted above, we don't need to go out of our way to avoid reading
`foo.nr`. This is probably more readable:
while (foo.nr) {
... o = object_array_pop(&foo);
// do something
}
The name of `object_array_pop()` does not quite align with
`add_object_array()`. That is unfortunate. On the other hand, it matches
`object_array_clear()`. Arguably it's `add_...` that is the odd one out,
since it reads like it's used to "add" an "object array". For that
reason, side with `object_array_clear()`.
Signed-off-by: Martin Ågren <martin.agren@gmail.com>
Reviewed-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
When run with the "-C" option, fast-export writes 'C' commands in its
output whenever the internal diff mechanism detects a file copy,
indicating that fast-import should copy the given existing file to the
given new filename. However, the diff mechanism works against the
prior version of the file, whereas fast-import uses whatever is current.
This causes issues when a commit both modifies a file and uses it as the
source for a copy.
Therefore, teach fast-export to refrain from writing 'C' when it has
already written a modification command for a file.
An existing test in t9350-fast-export is also fixed in this patch. The
existing line "C file6 file7" copies the wrong version of file6, but it
has coincidentally worked because file7 was subsequently overridden.
Reported-by: Juraj Oršulić <juraj.orsulic@fer.hr>
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
When using the hashmap a common need is to have access to caller provided
data in the compare function. A couple of times we abuse the keydata field
to pass in the data needed. This happens for example in patch-ids.c.
This patch changes the function signature of the compare function
to have one more void pointer available. The pointer given for each
invocation of the compare function must be defined in the init function
of the hashmap and is just passed through.
Documentation of this new feature is deferred to a later patch.
This is a rather mechanical conversion, just adding the new pass-through
parameter. However while at it improve the naming of the fields of all
compare functions used by hashmaps by ensuring unused parameters are
prefixed with 'unused_' and naming the parameters what they are (instead
of 'unused' make it 'unused_keydata').
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Fix configuration codepath to pay proper attention to commondir
that is used in multi-worktree situation, and isolate config API
into its own header file.
* bw/config-h:
config: don't implicitly use gitdir or commondir
config: respect commondir
setup: teach discover_git_directory to respect the commondir
config: don't include config.h by default
config: remove git_config_iter
config: create config.h
Stop including config.h by default in cache.h. Instead only include
config.h in those files which require use of the config system.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
We often try to open a file for reading whose existence is
optional, and silently ignore errors from open/fopen; report such
errors if they are not due to missing files.
* nd/fopen-errors:
mingw_fopen: report ENOENT for invalid file names
mingw: verify that paths are not mistaken for remote nicknames
log: fix memory leak in open_next_file()
rerere.c: move error_errno() closer to the source system call
print errno when reporting a system call error
wrapper.c: make warn_on_inaccessible() static
wrapper.c: add and use fopen_or_warn()
wrapper.c: add and use warn_on_fopen_errors()
config.mak.uname: set FREAD_READS_DIRECTORIES for Darwin, too
config.mak.uname: set FREAD_READS_DIRECTORIES for Linux and FreeBSD
clone: use xfopen() instead of fopen()
use xfopen() in more places
git_fopen: fix a sparse 'not declared' warning
