grep: turn on --cached for files that is marked skip-worktree
ls-files: do not check for deleted file that is marked skip-worktree
update-index: ignore update request if it's skip-worktree, while still allows removing
diff*: skip worktree version
Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
